44template <
typename format_type>
51 template <
typename ...ts>
54 format_type::read_alignment_record(std::forward<ts>(args)...);
78 requires (detail::sam_file_input_format_exposer<t> & v,
80 sam_file_input_options<dna5> & options,
82 sam_file_header<> & header,
88 dna5_vector & ref_seq,
96 sam_tag_dictionary & tag_dict,
124 { v.read_alignment_record(stream,
245template <
typename ...ts>
Provides aliases for qualified.
Provides the seqan3::cigar alphabet.
Provides seqan3::dna4, container aliases and string literals.
Provides seqan3::dna5, container aliases and string literals.
sam_flag
An enum flag that describes the properties of an aligned read (given as a SAM record).
Definition: sam_flag.hpp:76
constexpr bool is_type_list_of_sam_file_input_formats_v
Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqa...
Definition: input_format_concept.hpp:238
The internal SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
The main SeqAn3 namespace.
Definition: cleanup.hpp:4
Provides seqan3::phred42 quality scores.
Provides helper data structures for the seqan3::sam_file_output.
Provides the seqan3::sam_tag_dictionary class and auxiliaries.
Type that contains multiple types.
Definition: type_list.hpp:29
Provides seqan3::type_list.