SeqAn3 3.2.0-rc.1
The Modern C++ library for sequence analysis.
auxiliary.hpp
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
13#pragma once
14
15#include <seqan3/std/concepts>
16#include <sstream>
18#include <unordered_map>
19#include <vector>
20
24
25namespace seqan3::custom
26{
27
50template <typename t>
52{}; // forward
53
55template <typename t>
56struct argument_parsing<t const> : argument_parsing<t>
57{};
58
59template <typename t>
60struct argument_parsing<t &> : argument_parsing<t>
61{};
62
63template <typename t>
64struct argument_parsing<t const &> : argument_parsing<t>
65{};
67
68} // seqan3::custom
69
70namespace seqan3::detail::adl_only
71{
72
74template <typename t>
76
80template <typename option_t>
81struct enumeration_names_cpo : public detail::customisation_point_object<enumeration_names_cpo<option_t>, 1>
82{
84 using base_t = detail::customisation_point_object<enumeration_names_cpo<option_t>, 1>;
86 using base_t::base_t;
87
91 template <typename option_type>
92 using option_or_type_identity
96
100 template <typename option_type = option_t>
101 static constexpr auto SEQAN3_CPO_OVERLOAD(priority_tag<1>)
102 (
104 );
105
115 template <typename option_type = option_t>
116 static constexpr auto SEQAN3_CPO_OVERLOAD(priority_tag<0>)
117 (
118 /*return*/ enumeration_names(option_or_type_identity<option_type>{}) /*;*/
119 );
120};
121
122} // namespace seqan3::detail::adl_only
123
124namespace seqan3
125{
126
165template <typename option_type>
167 requires requires { { detail::adl_only::enumeration_names_cpo<option_type>{}() }; }
169inline auto const enumeration_names = detail::adl_only::enumeration_names_cpo<option_type>{}();
171
185template <typename option_type>
186concept named_enumeration = requires
187{
188 { seqan3::enumeration_names<option_type> };
189};
191
205template <typename option_type>
209
224template <typename char_t, typename option_type>
228inline debug_stream_type<char_t> & operator<<(debug_stream_type<char_t> & s, option_type && op)
229{
230 for (auto & [key, value] : enumeration_names<option_type>)
231 {
232 if (op == value)
233 return s << key;
234 }
235
236 return s << "<UNKNOWN_VALUE>";
237}
239
252enum option_spec
254 standard = 0,
255 required = 1,
260 advanced = 2,
264 hidden = 4
268};
269
271enum class update_notifications
272{
273 on,
274 off
275};
276
290struct argument_parser_meta_data // holds all meta information
325 unsigned man_page_section{1};
341};
342
343} // namespace seqan3
The <concepts> header from C++20's standard library.
Helper utilities for defining customisation point objects (CPOs).
#define SEQAN3_CPO_OVERLOAD(...)
A macro that helps to define a seqan3::detail::customisation_point_object.
Definition: customisation_point.hpp:102
Provides seqan3::debug_stream and related types.
debug_stream_type< char_t > & operator<<(debug_stream_type< char_t > &stream, alignment_t &&alignment)
Stream operator for alignments, which are represented as tuples of aligned sequences.
Definition: debug_stream_alignment.hpp:101
auto const enumeration_names
Return a conversion map from std::string_view to option_type.
Definition: auxiliary.hpp:163
option_spec
Used to further specify argument_parser options/flags.
Definition: auxiliary.hpp:247
@ standard
The default were no checking or special displaying is happening.
Definition: auxiliary.hpp:248
@ advanced
Definition: auxiliary.hpp:254
@ hidden
Definition: auxiliary.hpp:258
@ required
Definition: auxiliary.hpp:249
Checks whether the the type can be used in an add_(positional_)option call on the argument parser.
Concept for input streams.
Checks whether the free function seqan3::enumeration_names can be called on the type.
Stream concepts.
A namespace for third party and standard library specialisations of SeqAn customisation points.
Definition: char.hpp:44
The main SeqAn3 namespace.
Definition: cleanup.hpp:4
update_notifications
Indicates whether application allows automatic update notifications by the seqan3::argument_parser.
Definition: auxiliary.hpp:266
@ off
Automatic update notifications should be disabled.
@ on
Automatic update notifications should be enabled.
std::string long_copyright
Detailed copyright information that will be displayed when the user specifies "--copyright" on the co...
Definition: auxiliary.hpp:311
std::string man_page_title
The title of your man page when exported by specifying "--export-help man" on the common line.
Definition: auxiliary.hpp:317
std::string email
The author's e-mail address for correspondence.
Definition: auxiliary.hpp:299
std::string short_copyright
Brief copyright (and/or license) information.
Definition: auxiliary.hpp:307
std::string date
The date that the application was last updated. Keep this updated, ! since it will tell your users th...
Definition: auxiliary.hpp:303
std::string author
Your name ;-)
Definition: auxiliary.hpp:297
std::string version
The version information MAJOR.MINOR.PATH (e.g. 3.1.3)
Definition: auxiliary.hpp:293
std::string app_name
The application name that will be displayed on the help page.
Definition: auxiliary.hpp:291
std::vector< std::string > synopsis
Add lines of usage to the synopsis section of the help page (e.g. "./my_read_mapper [OPTIONS] FILE1 F...
Definition: auxiliary.hpp:329
std::string short_description
A short description of the application (e.g. "A tool for mapping reads to the genome").
Definition: auxiliary.hpp:295
std::string url
A link to your github/gitlab project with the newest release.
Definition: auxiliary.hpp:305
std::string citation
How users shall cite your application.
Definition: auxiliary.hpp:313
std::vector< std::string > description
A more detailed description that is displayed on the help page in the section "DESCRIPTION"....
Definition: auxiliary.hpp:325
std::vector< std::string > examples
Provide some examples on how to use your tool and what standard parameters might be appropriate in di...
Definition: auxiliary.hpp:334
unsigned man_page_section
The man page section info (type man man on the command line for more information).
Definition: auxiliary.hpp:319
A type that can be specialised to provide customisation point implementations for the seqan3::argumen...
Definition: auxiliary.hpp:52
The <type_traits> header from C++20's standard library.